Download fastq files command line [2020]

DEmultiplexing MOnitoring Report Tool. Demort evaluates demultiplexed fastq files by computing various metrics. - Grelot/demort Looking for mutations in PacBio cancer data: an alignment-free method - cbib/Micado Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto - gustaveroussy/rna-count-kallisto a snakemake pipeline to process ChIP-seq files from GEO or in-house - crazyhottommy/pyflow-ChIPseq

Pooling Illumina NextSeq 500 fastq files. Contribute to seb-mueller/pooling-nextseq-fastq development by creating an account on GitHub.

IDseq infectious disease command-line interface. Contribute to chanzuckerberg/idseq-cli development by creating an account on GitHub. Tool to create and distribute jobs on a queue system - fstrozzi/bioruby-grid DEmultiplexing MOnitoring Report Tool. Demort evaluates demultiplexed fastq files by computing various metrics. - Grelot/demort Looking for mutations in PacBio cancer data: an alignment-free method - cbib/Micado Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto - gustaveroussy/rna-count-kallisto

IDseq infectious disease command-line interface. Contribute to chanzuckerberg/idseq-cli development by creating an account on GitHub.

Various workflows, scripts and functions. Contribute to angelovangel/etc development by creating an account on GitHub. Download the test dataset files SRR3305543.fastq.gz, SRR3305544.fastq.gz, SRR3305545.fastq.gz, and SRR3305546.fastq.gz to your current directory. a python package for fast random access to sequences from plain and gzipped Fasta/Q files - lmdu/pyfastx A command-line tool for exporting data from Irida to the command line - phac-nml/irida-linker

Binary representation of fastq files. Contribute to sndrtj/fastqube development by creating an account on GitHub.

From version 1.4, when downloading read data if you use the default format (that is, don't use the format option), the scripts will look for available files in the following priority: submitted, sra, fastq. Contribute to mruffalo/sc-rna-seq-pipeline development by creating an account on GitHub. Invertible DNA switch frequency counter. Contribute to LeahRoberts/Discus development by creating an account on GitHub. Ultra-efficient taxonomic mapping of NGS data. Contribute to nygenome/taxmaps development by creating an account on GitHub. Fastq compression. Contribute to shubhamchandak94/Spring development by creating an account on GitHub. NCBI-SRA and EBI-ENA databases This is a brief tutorial about methods of downloading sra, sam and fastq files, mainly focusing on Aspera Connect. Repost b The Download Agent is a command-line tool for downloading large quantities of files from DNAnexus to a local environment.

Looking for mutations in PacBio cancer data: an alignment-free method - cbib/Micado Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto - gustaveroussy/rna-count-kallisto a snakemake pipeline to process ChIP-seq files from GEO or in-house - crazyhottommy/pyflow-ChIPseq A library and collection of scripts to work with Illumina paired-end data (for Casava 1.7+ pipeline). - merenlab/illumina-utils

DEmultiplexing MOnitoring Report Tool. Demort evaluates demultiplexed fastq files by computing various metrics. - Grelot/demort

a python package for fast random access to sequences from plain and gzipped Fasta/Q files - lmdu/pyfastx A command-line tool for exporting data from Irida to the command line - phac-nml/irida-linker Import of data from BAM, SAM or FastQ files (any variant) Note that '--split-3' option will splits mate-pair reads into separate files (First biological reads satisfying dumping conditions are placed in files *_1.fastq and *_2.fastq If only one biological read is present it is placed in *.fastq… You can upload files up to 10 GB size, however if you need to upload even larger one it is possible. Just reach us through mail meta@cesnet.cz IDseq infectious disease command-line interface. Contribute to chanzuckerberg/idseq-cli development by creating an account on GitHub.